Oriole is a synthetic biology design tool that divides a biological network into implementable sub-networks, when given a set of engineering constraints. It allows users to convert a biological network, such as a gene regulatory network, metabolic network or species interaction network, into its graphical representation, and be divided into a set of sub-networks with user-defined objectives and constraints. Such sub-networks can be engineered experimentally to communicate and carry out distributed functions.
Parses GOLDBAR and SBOL
Visualization of design space
NIH-T32 Synthetic Biology and Biotechnology Fellowship